Spatiotemporal Statistical Downscaling for the Fusion of In-lake and Remote Sensing Data

This paper addresses the problem of fusing data from in-lake monitoring programmes with remote sensing data, through statistical downscaling. A Bayesian hierarchical model is developed, in order to fuse the in-lake and remote sensing data using spatially-varying coefficients. The model is applied to an example dataset of log(chlorophyll-a) data for Lake Erie, one of the Great Lakes of North America

Developments in Earth observation for the assessment and monitoring of inland, transitional, coastal and shelf-sea waters

The Earth's surface waters are a fundamental resource and encompass a broad range of ecosystems that are core to global biogeochemical cycling and food and energy production. Despite this, the Earth's surface waters are impacted by multiple natural and anthropogenic pressures and drivers of environmental change. The complex interaction between physical, chemical and biological processes in surface waters poses significant challenges for in situ monitoring and assessment and often limits our ability to adequately capture the dynamics of aquatic systems and our understanding of their status, functioning and response to pressures. Here we explore the opportunities that Earth observation (EO) has to offer to basin-scale monitoring of water quality over the surface water continuum comprising inland, transition and coastal water bodies, with a particular focus on the Danube and Black Sea region. This review summarises the technological advances in EO and the opportunities that the next generation satellites offer for water quality monitoring. We provide an overview of algorithms for the retrieval of water quality parameters and demonstrate how such models have been used for the assessment and monitoring of inland, transitional, coastal and shelf-sea systems. Further, we argue that very few studies have investigated the connectivity between these systems especially in large river-sea systems such as the Danube-Black Sea. Subsequently, we describe current capability in operational processing of archive and near real-time satellite data. We conclude that while the operational use of satellites for the assessment and monitoring of surface waters is still developing for inland and coastal waters and more work is required on the development and validation of remote sensing algorithms for these optically complex waters, the potential that these data streams offer for developing an improved, potentially paradigm-shifting understanding of physical and biogeochemical processes across large scale river-sea continuum including the Danube-Black Sea is considerable

The potential hidden age of dissolved organic carbon exported by peatland streams

Radiocarbon (14C) is a key tracer for detecting the mobilization of previously stored terrestrial organic carbon (C) into aquatic systems. Old C (>1,000 years BP) may be “masked” by postbomb C (fixed from the atmosphere post‐1950 CE), potentially rendering bulk aquatic dissolved organic C (DOC) 14C measurements insensitive to old C. We collected DOC with a modern 14C signature from a temperate Scottish peatland stream and decomposed it to produce CO2 under simulated natural conditions over 140 days. We measured the 14C of both DOC and CO2 at seven time points and found that while DOC remained close to modern in age, the resultant CO2 progressively increased in age up to 2,356 ± 767 years BP. The results of this experiment demonstrate that the bulk DO14C pool can hide the presence of old C within peatland stream DOC export, demonstrating that bulk DO14C measurements can be an insensitive indicator of peatland disturbance. Our experiment also demonstrates that this old C component is biologically and photochemically available for conversion to the greenhouse gas CO2, and as such, bulk DO14C measurements do not reflect the 14C signature of the labile organic C pool exported by inland water systems more broadly. Moreover, our experiment suggests that old C may be an important component of CO2 emissions to the atmosphere from peatland aquatic systems, with implications for tracing and modeling interactions between the hydrological and terrestrial C cycles

Atmospheric Correction Performance of Hyperspectral Airborne Imagery over a Small Eutrophic Lake under Changing Cloud Cover

Atmospheric correction of remotely sensed imagery of inland water bodies is essential to interpret water-leaving radiance signals and for the accurate retrieval of water quality variables. Atmospheric correction is particularly challenging over inhomogeneous water bodies surrounded by comparatively bright land surface. We present results of AisaFENIX airborne hyperspectral imagery collected over a small inland water body under changing cloud cover, presenting challenging but common conditions for atmospheric correction. This is the first evaluation of the performance of the FENIX sensor over water bodies. ATCOR4, which is not specifically designed for atmospheric correction over water and does not make any assumptions on water type, was used to obtain atmospherically corrected reflectance values, which were compared to in situ water-leaving reflectance collected at six stations. Three different atmospheric correction strategies in ATCOR4 was tested. The strategy using fully image-derived and spatially varying atmospheric parameters produced a reflectance accuracy of ±0.002, i.e., a difference of less than 15% compared to the in situ reference reflectance. Amplitude and shape of the remotely sensed reflectance spectra were in general accordance with the in situ data. The spectral angle was better than 4.1° for the best cases, in the spectral range of 450–750 nm. The retrieval of chlorophyll-a (Chl-a) concentration using a popular semi-analytical band ratio algorithm for turbid inland waters gave an accuracy of ~16% or 4.4 mg/m3compared to retrieval of Chl-a from reflectance measured in situ. Using fixed ATCOR4 processing parameters for whole images improved Chl-a retrieval results from ~6 mg/m3difference to reference to approximately 2 mg/m3. We conclude that the AisaFENIX sensor, in combination with ATCOR4 in image-driven parametrization, can be successfully used for inland water quality observations. This implies that the need for in situ reference measurements is not as strict as has been assumed and a high degree of automation in processing is possible

A global approach for chlorophyll-a retrieval across optically complex inland waters based on optical water types

Numerous algorithms have been developed to retrieve chlorophyll-a (Chla) concentrations (mg m−3) from Earth observation (EO) data collected over optically complex waters. Retrieval accuracy is highly variable and often unsatisfactory where Chla co-occurs with other optically active constituents. Furthermore, the applicability and limitations of retrieval algorithms across different optical complex systems in space and time are often not considered. In the first instance, this paper provides an extensive performance assessment for 48 Chla retrieval algorithms of varying architectural design. The algorithms are tested in their original parametrisations and are then retuned using in-situ remote sensing reflectance (Rrs(λ), sr−1) data (n = 2807) collected from 185 global inland and coastal aquatic systems encompassing 13 different optical water types (OWTs). The paper then demonstrates retrieval performance across the full dataset of observations and within individual OWTs to determine the most effective model(s) of those tested for retrieving Chla in waters with varying optical properties. The results revealed significant variability in retrieval performance when comparing model outputs to in-situ measured Chla for the full in-situ dataset in its entirety and within the 13 distinct OWTs. Importantly, retuning an algorithm to optimise its parameterisation for each individual OWT (i.e. one algorithm, multiple parameterisations) is found to improve the retrieval of Chla overall compared to simply calibrating the same algorithm using the complete in-situ dataset (i.e. one algorithm, one parameterisation). This resulted in a 25% improvement in retrieval accuracy based on relative percentage difference errors for the best performing Chla algorithm. Improved performance is further achieved by allowing model type and specific parameterisation to vary across OWTs (i.e. multiple algorithms, multiple parameterisations). This adaptive framework for the dynamic selection of in-water algorithms is shown to provide overall improvement in Chla retrieval across a continuum of bio-geo-optical conditions. The final dynamic ensemble algorithm produces estimates of (log10-transformed) Chla with a correlation coefficient of 0.89 and a mean absolute error of 0.18 mg m−3. The OWT framework presented in this study demonstrates a unified approach by bringing together an ensemble of algorithms for the monitoring of inland waters at a global scale from space

Data Fusion of Remote-sensing and In-lake chlorophyll a Data Using Statistical Downscaling

Chlorophyll a is a green pigment, used as an indirect measure of lake water quality. Its strong absorption of blue and red light allows for quantification through satellite images, providing better spatial coverage than traditional in-lake samples. However, grid-cell scale imagery must be calibrated spatially using in-lake point samples, presenting a change-of-support problem. This paper presents a method of statistical downscaling, namely a Bayesian spatially-varying coefficient regression, which assimilates remotely-sensed and in-lake data, resulting in a fully calibrated spatial map of chlorophyll a with associated uncertainty measures. The model is applied to a case study dataset from Lake Balaton, Hungary

Standardized spectral and radiometric calibration of consumer cameras

Consumer cameras, particularly onboard smartphones and UAVs, are now commonly used as scientific instruments. However, their data processing pipelines are not optimized for quantitative radiometry and their calibration is more complex than that of scientific cameras. The lack of a standardized calibration methodology limits the interoperability between devices and, in the ever-changing market, ultimately the lifespan of projects using them. We present a standardized methodology and database (SPECTACLE) for spectral and radiometric calibrations of consumer cameras, including linearity, bias variations, read-out noise, dark current, ISO speed and gain, flat-field, and RGB spectral response. This includes golden standard ground-truth methods and do-it-yourself methods suitable for non-experts. Applying this methodology to seven popular cameras, we found high linearity in RAW but not JPEG data, inter-pixel gain variations >400% correlated with large-scale bias and read-out noise patterns, non-trivial ISO speed normalization functions, flat-field correction factors varying by up to 2.79 over the field of view, and both similarities and differences in spectral response. Moreover, these results differed wildly between camera models, highlighting the importance of standardization and a centralized database

Remote sensing chlorophyll a of optically complex waters (rias Baixas, NW Spain): Application of a regionally specific chlorophyll a algorithm for MERIS full resolution data during an upwelling cycle

This study takes advantage of a regionally specific algorithm and the characteristics of Medium Resolution Imaging Spectrometer (MERIS) in order to deliver more accurate, detailed chlorophyll a (chla) maps of optically complex coastal waters during an upwelling cycle. MERIS full resolution chla concentrations and in situ data were obtained on the Galician (NW Spain) shelf and in three adjacent rias (embayments), sites of extensive mussel culture that experience frequent harmful algal events. Regionally focused algorithms (Regional neural network for rias Baixas or NNRB) for the retrieval of chla in the Galician rias optically complex waters were tested in comparison to sea-truth data. The one that showed the best performance was applied to a series of six MERIS (FR) images during a summer upwelling cycle to test its performance. The best performance parameters were given for the NN trained with high-quality data using the most abundant cluster found in the rias after the application of fuzzy c-mean clustering techniques (FCM). July 2008 was characterized by three periods of different meteorological and oceanographic states. The main changes in chla concentration and distribution were clearly captured in the images. After a period of strong upwelling favorable winds a high biomass algal event was recorded in the study area. However, MERIS missed the high chlorophyll upwelled water that was detected below surface in the ria de Vigo by the chla profiles, proving the necessity of in situ observations. Relatively high biomass “patches” were mapped in detail inside the rias. There was a significant variation in the timing and the extent of the maximum chla areas. The maps confirmed that the complex spatial structure of the phytoplankton distribution in the rias Baixas is affected by the surface currents and winds on the adjacent continental shelf. This study showed that a regionally specific algorithm for an ocean color sensor with the characteristics of MERIS in combination with in situ data can be of great help in chla monitoring, detection and study of high biomass algal events in an area affected by coastal upwelling such as the rias Baixas

Nonparametric statistical downscaling for the fusion of data of different spatiotemporal support

Statistical downscaling has been developed for the fusion of data of different spatial support. However, environmental data often have different temporal support, which must also be accounted for. This paper presents a novel method of nonparametric statistical downscaling, which enables the fusion of data of different spatiotemporal support through treating the data at each location as observations of smooth functions over time. This is incorporated within a Bayesian hierarchical model with smoothly spatially varying coefficients, which provides predictions at any location or time, with associated estimates of uncertainty. The method is motivated by an application for the fusion of in situ and satellite remote sensing log(chlorophyll-a) data from Lake Balaton, in order to improve the understanding of water quality patterns over space and time

Machine Learning Methods Applied to the Prediction of Pseudo-nitzschia spp. Blooms in the Galician Rias Baixas (NW Spain)

This work presents new prediction models based on recent developments in machine learning methods, such as Random Forest (RF) and AdaBoost, and compares them with more classical approaches, i.e., support vector machines (SVMs) and neural networks (NNs). The models predict Pseudo-nitzschia spp. blooms in the Galician Rias Baixas. This work builds on a previous study by the authors (doi.org/10.1016/j.pocean.2014.03.003) but uses an extended database (from 2002 to 2012) and new algorithms. Our results show that RF and AdaBoost provide better prediction results compared to SVMs and NNs, as they show improved performance metrics and a better balance between sensitivity and specificity. Classical machine learning approaches show higher sensitivities, but at a cost of lower specificity and higher percentages of false alarms (lower precision). These results seem to indicate a greater adaptation of new algorithms (RF and AdaBoost) to unbalanced datasets. Our models could be operationally implemented to establish a short-term prediction system